CDS

Accession Number TCMCG057C19886
gbkey CDS
Protein Id XP_018485158.1
Location complement(join(35580678..35581329,35581433..35581566,35581683..35581821,35582036..35582187))
Gene LOC108855765
GeneID 108855765
Organism Raphanus sativus

Protein

Length 358aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018629656.1
Definition PREDICTED: structure-specific endonuclease subunit SLX1-like [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category L
Description Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K15078        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03460        [VIEW IN KEGG]
map03460        [VIEW IN KEGG]
GOs GO:0000228        [VIEW IN EMBL-EBI]
GO:0000723        [VIEW IN EMBL-EBI]
GO:0001325        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004520        [VIEW IN EMBL-EBI]
GO:0004536        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008821        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010638        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016888        [VIEW IN EMBL-EBI]
GO:0016889        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0016894        [VIEW IN EMBL-EBI]
GO:0017108        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032200        [VIEW IN EMBL-EBI]
GO:0032204        [VIEW IN EMBL-EBI]
GO:0032206        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0033557        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044087        [VIEW IN EMBL-EBI]
GO:0044089        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048256        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051054        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0060249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090656        [VIEW IN EMBL-EBI]
GO:0090737        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1904429        [VIEW IN EMBL-EBI]
GO:1904431        [VIEW IN EMBL-EBI]
GO:2001252        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGAGAGAAAAGGGGGAGAAGGGAAAATCCGAAAACCCTAGATCCAATCGGAGAGGATGGTCTCGTCGCCGGAAAAGAAGGAAAAGGGTTCTACGCGTGCTACATCTTGACCTCCCTTAGCCCTCGCCACAAGGGTCACACCTATATCGGGTTCACGGTGAACCCAAAGCGGAGGATAAGGCAGCACAACGGAGAGATCACAAGTGGTGCATATAGAACCAAGAAGAAACGTCCTTGGGAAATGGTCCTCTGTATCTATGGTTTCCCCACTAATGTCTCTGCCCTTCAGTTTGAATGGGCGTGGCAGCATCCGAGAGAATCACTTGCTGTGAGAGAAGCCGCCGCTGCTTTCAAATCCTTCTCTGGACTTGCTACCAATATCAAGCTTGCTTACACTATGCTCTCTCTTCCTGCTTGGAATAGTTTAAACCTGAAAGTCAACTATTTCTCATCGAAGTATGCACACCTTGGCGGTCTTTCTCCAAGTTTGCCTCCTCATATGGAAGTCCATGTTTGTCCTATGGATGATCTTCCTTGTTTCACTAAAGGAGACGACGATTCTCAAGAAGAAGATGAAGAGAGTCTTGATAGTAACGAAGAAGAGGATGATGATATTAGCAACCAAAGCCAGCCTGGGAATCCAACTTCAAGCCACTTGCTTGACACACATGTTGAGAAAGGGAAAGGACCTGAGACTGTACTTGATGACAGATTAGCAAACTTCACTGGTTTTGGGTTATTATTAGATGAGAGTGATGACGATGAAGTGCCTTATAGCACTGTAGGAGGATCCTTTGAAGCTGTGGAGAAAGAACCGGAGATTGTATTTCATGACAGGTCAGCAAACTTCACTGGTTTTGGTGTAGAAAAGATTGTTGAAGACAAAGCATCATTTAGCAATACGGAGAAAGATTGTTGGAGAAGAAGCAACTTTGTTACATCGACCACTGAAGTTGAAGTGATTGATCTGATGACTCCATCACCGAGCTGCAGAGTTGGATCGTCTATGAAGAAGAGGCCAAGAGTTTCTGAGTTTATAGATTTGACAAGGTCTCCTAATTTCATAGAGTTGTAA
Protein:  
MREKRGRRENPKTLDPIGEDGLVAGKEGKGFYACYILTSLSPRHKGHTYIGFTVNPKRRIRQHNGEITSGAYRTKKKRPWEMVLCIYGFPTNVSALQFEWAWQHPRESLAVREAAAAFKSFSGLATNIKLAYTMLSLPAWNSLNLKVNYFSSKYAHLGGLSPSLPPHMEVHVCPMDDLPCFTKGDDDSQEEDEESLDSNEEEDDDISNQSQPGNPTSSHLLDTHVEKGKGPETVLDDRLANFTGFGLLLDESDDDEVPYSTVGGSFEAVEKEPEIVFHDRSANFTGFGVEKIVEDKASFSNTEKDCWRRSNFVTSTTEVEVIDLMTPSPSCRVGSSMKKRPRVSEFIDLTRSPNFIEL